J3_2D3O_002

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

2D3O|1|0|G|699, 2D3O|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_002 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.288

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

2D3O|1|0|U|696
2D3O|1|0|G|697
2D3O|1|0|A|698
2D3O|1|0|G|699
2D3O|1|0|C|700
2D3O|1|0|U|701
2D3O|1|0|A|702
*
2D3O|1|0|U|786
2D3O|1|0|A|787
2D3O|1|0|G|788
*
2D3O|1|0|C|804
2D3O|1|0|G|805
2D3O|1|0|A|806
2D3O|1|0|A|807

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains