J3_2D3O_003

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

2D3O|1|0|U|775, 2D3O|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_003 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2884

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

2D3O|1|0|C|710
2D3O|1|0|C|711
2D3O|1|0|A|712
2D3O|1|0|G|713
*
2D3O|1|0|C|745
2D3O|1|0|G|746
2D3O|1|0|A|747
2D3O|1|0|A|748
2D3O|1|0|C|749
*
2D3O|1|0|G|773
2D3O|1|0|A|774
2D3O|1|0|U|775
2D3O|1|0|G|776
2D3O|1|0|A|777
2D3O|1|0|G|778

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains