J3_2D3O_004

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGA*UUCAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_004 not in the Motif Atlas

Homologous match to J3_9DFE_009

Geometric discrepancy: 0.4847

The information below is about J3_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|G|1066
2D3O|1|0|G|1067
2D3O|1|0|A|1068
*
2D3O|1|0|U|1092
2D3O|1|0|U|1093
2D3O|1|0|C|1094
2D3O|1|0|A|1095
2D3O|1|0|A|1096
2D3O|1|0|A|1097
2D3O|1|0|G|1098
*
2D3O|1|0|C|1113
2D3O|1|0|A|1114
2D3O|1|0|C|1115

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains