J3_9DFE_009

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFE_009 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1513

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

9DFE|1|1A|G|1055
9DFE|1|1A|G|1056
9DFE|1|1A|A|1057
*
9DFE|1|1A|U|1081
9DFE|1|1A|U|1082
9DFE|1|1A|U|1083
9DFE|1|1A|A|1084
9DFE|1|1A|A|1085
9DFE|1|1A|A|1086
9DFE|1|1A|G|1087
*
9DFE|1|1A|C|1102
9DFE|1|1A|A|1103
9DFE|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36