J3_2D3O_005

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1106

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2D3O|1|0|C|1311
2D3O|1|0|G|1312
2D3O|1|0|U|1313
2D3O|1|0|A|1314
2D3O|1|0|A|1315
2D3O|1|0|G|1316
*
2D3O|1|0|C|1641
2D3O|1|0|G|1642
2D3O|1|0|A|1643
*
2D3O|1|0|U|1656
2D3O|1|0|A|1657
2D3O|1|0|A|1658
2D3O|1|0|G|1659

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains