J3_2D3O_011

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

2D3O|1|0|G|514, 2D3O|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_011 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2571

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

2D3O|1|0|G|30
2D3O|1|0|C|31
*
2D3O|1|0|G|485
2D3O|1|0|U|486
2D3O|1|0|G|487
2D3O|1|0|A|488
2D3O|1|0|A|489
2D3O|1|0|A|490
2D3O|1|0|A|491
2D3O|1|0|G|492
2D3O|1|0|A|493
2D3O|1|0|A|494
2D3O|1|0|C|495
*
2D3O|1|0|G|506
2D3O|1|0|A|507
2D3O|1|0|G|508
2D3O|1|0|U|509
2D3O|1|0|G|510
2D3O|1|0|A|511
2D3O|1|0|A|512
2D3O|1|0|A|513
2D3O|1|0|G|514
2D3O|1|0|A|515
2D3O|1|0|G|516
2D3O|1|0|A|517
2D3O|1|0|A|518
2D3O|1|0|C|519
2D3O|1|0|C|520

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L23

Chain S

50S RIBOSOMAL PROTEIN L24