J3_2D3O_015

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

2D3O|1|0|C|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_015 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.2535

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

2D3O|1|0|G|1438
2D3O|1|0|G|1439
2D3O|1|0|G|1440
2D3O|1|0|A|1441
2D3O|1|0|C|1442
2D3O|1|0|G|1443
*
2D3O|1|0|C|1580
2D3O|1|0|C|1581
*
2D3O|1|0|G|1584
2D3O|1|0|A|1585
2D3O|1|0|A|1586
2D3O|1|0|A|1587
2D3O|1|0|A|1588
2D3O|1|0|G|1589
2D3O|1|0|C|1590

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains