J3_2D3O_018

3D structure

PDB id

2D3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCC*GCUUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

2D3O|1|0|U|2402, 2D3O|1|0|A|2405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2D3O_018 not in the Motif Atlas

Homologous match to J3_7A0S_020

Geometric discrepancy: 0.2498

The information below is about J3_7A0S_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.2

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

2D3O|1|0|G|2261
2D3O|1|0|C|2262
2D3O|1|0|C|2263
*
2D3O|1|0|G|2363
2D3O|1|0|C|2364
2D3O|1|0|U|2365
2D3O|1|0|U|2366
2D3O|1|0|A|2367
2D3O|1|0|G|2368
2D3O|1|0|U|2369
2D3O|1|0|G|2370
2D3O|1|0|A|2371
2D3O|1|0|A|2372
2D3O|1|0|C|2373
2D3O|1|0|C|2374
*
2D3O|1|0|G|2400
2D3O|1|0|A|2401
2D3O|1|0|U|2402
2D3O|1|0|C|2403
2D3O|1|0|A|2404
2D3O|1|0|A|2405
2D3O|1|0|C|2406

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains