J3_2J28_001
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 2J28|1|A|A|108
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2J28_001 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.1902
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
2J28|1|A|G|10
2J28|1|A|C|11
2J28|1|A|C|12
2J28|1|A|G|13
2J28|1|A|U|14
2J28|1|A|A|15
2J28|1|A|G|16
*
2J28|1|A|C|68
2J28|1|A|G|69
2J28|1|A|C|70
*
2J28|1|A|G|106
2J28|1|A|G|107
2J28|1|A|A|108
2J28|1|A|A|109
2J28|1|A|C|110
Current chains
- Chain A
- 5S RIBOSOMAL RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S RIBOSOMAL PROTEIN L18
- Chain V
- 50S RIBOSOMAL PROTEIN L25
- Chain W
- 50S RIBOSOMAL PROTEIN L27
Coloring options: