3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
2J28|1|B|U|686, 2J28|1|B|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2J28_002 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.0747
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

2J28|1|B|U|683
2J28|1|B|G|684
2J28|1|B|A|685
2J28|1|B|U|686
2J28|1|B|C|687
2J28|1|B|U|688
2J28|1|B|A|689
*
2J28|1|B|U|773
2J28|1|B|G|774
2J28|1|B|G|775
*
2J28|1|B|C|791
2J28|1|B|A|792
2J28|1|B|A|793
2J28|1|B|A|794

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain 2
50S RIBOSOMAL PROTEIN L34
Chain C
50S RIBOSOMAL PROTEIN L2

Coloring options:


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