J3_2J28_006

3D structure

PDB id

2J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

MODEL OF E. COLI SRP BOUND TO 70S RNCS

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

2J28|1|B|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2J28_006 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1629

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

2J28|1|B|C|1306
2J28|1|B|A|1307
2J28|1|B|A|1308
2J28|1|B|G|1309
*
2J28|1|B|C|1605
2J28|1|B|C|1606
2J28|1|B|C|1607
2J28|1|B|A|1608
2J28|1|B|A|1609
2J28|1|B|A|1610
2J28|1|B|C|1611
*
2J28|1|B|G|1620
2J28|1|B|U|1621
2J28|1|B|G|1622

Current chains

Chain B

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34