3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
2J28|1|B|U|2320, 2J28|1|B|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2J28_008 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.2787
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

2J28|1|B|C|2295
2J28|1|B|U|2296
2J28|1|B|A|2297
2J28|1|B|A|2298
2J28|1|B|U|2299
*
2J28|1|B|A|2317
2J28|1|B|G|2318
2J28|1|B|G|2319
2J28|1|B|U|2320
2J28|1|B|U|2321
2J28|1|B|A|2322
2J28|1|B|G|2323
*
2J28|1|B|C|2332
2J28|1|B|A|2333
2J28|1|B|U|2334
2J28|1|B|A|2335
2J28|1|B|A|2336
2J28|1|B|G|2337

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain A
5S ribosomal RNA; 5S rRNA
Chain F
50S RIBOSOMAL PROTEIN L5
Chain O
50S RIBOSOMAL PROTEIN L18
Chain W
50S RIBOSOMAL PROTEIN L27

Coloring options:


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