3D structure

PDB id
2J28 (explore in PDB, NAKB, or RNA 3D Hub)
Description
MODEL OF E. COLI SRP BOUND TO 70S RNCS
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
2J28|1|B|A|2518, 2J28|1|B|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2J28_009 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0656
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

2J28|1|B|C|2517
2J28|1|B|A|2518
2J28|1|B|U|2519
2J28|1|B|C|2520
*
2J28|1|B|G|2545
2J28|1|B|U|2546
2J28|1|B|A|2547
*
2J28|1|B|U|2561
2J28|1|B|U|2562
2J28|1|B|U|2563
2J28|1|B|A|2564
2J28|1|B|A|2565
2J28|1|B|A|2566
2J28|1|B|G|2567

Current chains

Chain B
23S RIBOSOMAL RNA

Nearby chains

Chain 4
50S RIBOSOMAL PROTEIN L36
Chain D
50S RIBOSOMAL PROTEIN L3
Chain K
50S RIBOSOMAL PROTEIN L14

Coloring options:


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