J3_2J28_012
3D structure
- PDB id
- 2J28 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MODEL OF E. COLI SRP BOUND TO 70S RNCS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 2J28|1|B|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2J28_012 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0765
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
2J28|1|B|A|56
2J28|1|B|C|57
*
2J28|1|B|G|70
2J28|1|B|A|71
2J28|1|B|U|72
2J28|1|B|A|73
2J28|1|B|A|74
2J28|1|B|G|75
2J28|1|B|C|76
*
2J28|1|B|G|110
2J28|1|B|A|111
2J28|1|B|U|112
2J28|1|B|U|113
2J28|1|B|U|114
Current chains
- Chain B
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 2
- 50S RIBOSOMAL PROTEIN L34
- Chain T
- 50S RIBOSOMAL PROTEIN L23
- Chain X
- 50S RIBOSOMAL PROTEIN L29
Coloring options: