J3_2JL6_007

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL6_007 not in the Motif Atlas

Geometric match to J3_8VTW_004

Geometric discrepancy: 0.259

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

2JL6|1|A|C|1298
2JL6|1|A|G|1299
2JL6|1|A|U|1300
2JL6|1|A|A|1301
2JL6|1|A|A|1302
2JL6|1|A|G|1303
*
2JL6|1|A|C|1625
2JL6|1|A|G|1626
2JL6|1|A|G|1627
*
2JL6|1|A|U|1639
2JL6|1|A|C|1640
2JL6|1|A|A|1641
2JL6|1|A|G|1642

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains