J3_2JL6_009

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL6_009 not in the Motif Atlas

Geometric match to J3_8VTW_043

Geometric discrepancy: 0.2746

The information below is about J3_8VTW_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70383.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

2JL6|1|A|G|1344
2JL6|1|A|C|1345
2JL6|1|A|G|1346
2JL6|1|A|G|1347
2JL6|1|A|G|1348
2JL6|1|A|A|1349
2JL6|1|A|C|1350
*
2JL6|1|A|G|1381
2JL6|1|A|G|1382
2JL6|1|A|C|1383
2JL6|1|A|A|1384
2JL6|1|A|G|1385
*
2JL6|1|A|C|1402
2JL6|1|A|C|1403

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain X

50S RIBOSOMAL PROTEIN L23