J3_2JL8_004

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

2JL8|1|A|G|686, 2JL8|1|A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL8_004 not in the Motif Atlas

Geometric match to J3_7A0S_004

Geometric discrepancy: 0.0877

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

2JL8|1|A|C|683
2JL8|1|A|G|684
2JL8|1|A|A|685
2JL8|1|A|G|686
2JL8|1|A|C|687
2JL8|1|A|U|688
2JL8|1|A|A|689
*
2JL8|1|A|U|773
2JL8|1|A|A|774
2JL8|1|A|G|775
*
2JL8|1|A|C|791
2JL8|1|A|G|792
2JL8|1|A|A|793
2JL8|1|A|G|794

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 7

50S RIBOSOMAL PROTEIN L34

Chain D

50S RIBOSOMAL PROTEIN L2