J3_2JL8_005

3D structure

PDB id

2JL8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2JL8_005 not in the Motif Atlas

Geometric match to J3_8VTW_002

Geometric discrepancy: 0.0654

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

2JL8|1|A|C|698
2JL8|1|A|A|699
2JL8|1|A|G|700
*
2JL8|1|A|C|732
2JL8|1|A|G|733
2JL8|1|A|A|734
2JL8|1|A|A|735
2JL8|1|A|C|736
*
2JL8|1|A|G|760
2JL8|1|A|A|761
2JL8|1|A|U|762
2JL8|1|A|G|763

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 7

50S RIBOSOMAL PROTEIN L34

Chain D

50S RIBOSOMAL PROTEIN L2