J3_2JL8_013
3D structure
- PDB id
- 2JL8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome (part 4 of 4). This file contains the 50S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 2JL8|1|A|G|2833, 2JL8|1|A|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2JL8_013 not in the Motif Atlas
- Geometric match to J3_8VTW_046
- Geometric discrepancy: 0.0777
- The information below is about J3_8VTW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
2JL8|1|A|C|2814
2JL8|1|A|C|2815
*
2JL8|1|A|G|2831
2JL8|1|A|U|2832
2JL8|1|A|G|2833
2JL8|1|A|G|2834
2JL8|1|A|A|2835
2JL8|1|A|U|2836
*
2JL8|1|A|A|2882
2JL8|1|A|A|2883
2JL8|1|A|U|2884
2JL8|1|A|C|2885
2JL8|1|A|G|2886
Current chains
- Chain A
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 5
- 50S RIBOSOMAL PROTEIN L32
- Chain E
- 50S RIBOSOMAL PROTEIN L3
- Chain R
- 50S RIBOSOMAL PROTEIN L17
Coloring options: