#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5break 6 7break 8 9 10 111-112-104-75-67-8
1 J3_8VTW_0468VTW0.000021A LSU rRNAA2882A2883U2884C2885G2886*C2814C2815*G2831U2832G2834U2836cWWtHScWWcWW
2 J3_4WF9_0214WF90.16032X LSU rRNAA2902A2903U2904C2905G2906*C2834C2835*G2851U2852A2854U2856cWWtHScWWcWW
3 J3_7A0S_0137A0S0.18872X LSU rRNAC2857A2858U2859C2860A2861*U2789C2790*G2806U2807A2809G2811cWWtHScWWcWW
4 J3_4V9F_0194V9F0.288020 LSU rRNAA2905A2906C2907A2908G2909*C2831C2832*G2848U2849G2851U2853cWWtHScWScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GUGGAU*AAUCG1
CC*GUUAAU*AAUCG1
UC*GUUAAG*CAUCA1
CC*GUCGAU*AACAG1
Non-Watson-Crick part of the motif
SequenceCounts
*UUAA*AUC2
*UGGA*AUC1
*UCGA*ACA1

Release history

Release3.883.893.90
Date2024-09-112024-10-092024-11-06
StatusNew id, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-tHS-F-F-F-cWW-cWW
    Heat map statistics
    Min 0.16 | Avg 0.18 | Max 0.31
    Help

    Coloring options:

    J3_8VTW_046:J3_8VTW_046 = 0J3_8VTW_046:J3_4WF9_021 = 0.1603J3_8VTW_046:J3_7A0S_013 = 0.1887J3_8VTW_046:J3_4V9F_019 = 0.288J3_4WF9_021:J3_8VTW_046 = 0.1603J3_4WF9_021:J3_4WF9_021 = 0J3_4WF9_021:J3_7A0S_013 = 0.1858J3_4WF9_021:J3_4V9F_019 = 0.3119J3_7A0S_013:J3_8VTW_046 = 0.1887J3_7A0S_013:J3_4WF9_021 = 0.1858J3_7A0S_013:J3_7A0S_013 = 0J3_7A0S_013:J3_4V9F_019 = 0.2715J3_4V9F_019:J3_8VTW_046 = 0.288J3_4V9F_019:J3_4WF9_021 = 0.3119J3_4V9F_019:J3_7A0S_013 = 0.2715J3_4V9F_019:J3_4V9F_019 = 0J3_8VTW_046J3_4WF9_021J3_7A0S_013J3_4V9F_019Discrepancy0.000.050.100.150.200.250.30
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