J3_2NZ4_001

3D structure

PDB id

2NZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural investigation of the GlmS ribozyme bound to its catalytic cofactor

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GA*UGAC*GAGAUUUC

Length

14 nucleotides

Bulged bases

2NZ4|1|P|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2NZ4_001 not in the Motif Atlas

Geometric match to J3_3G9C_002

Geometric discrepancy: 0.1294

The information below is about J3_3G9C_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60873.1

Basepair signature

cWW-cSH-tWW-F-tHS-F-cWW-tWS-cWW

Number of instances in this motif group

1

Unit IDs

2NZ4|1|E|G|7
2NZ4|1|E|A|8
*
2NZ4|1|P|U|26
2NZ4|1|P|G|27
2NZ4|1|P|A|28
2NZ4|1|P|C|29
*
2NZ4|1|P|G|45
2NZ4|1|P|A|46
2NZ4|1|P|G|47
2NZ4|1|P|A|48
2NZ4|1|P|U|49
2NZ4|1|P|U|50
2NZ4|1|P|U|51
2NZ4|1|P|C|52

Current chains

Chain E

substrate strand RNA 13-mer

Chain P

GlmS ribozyme

Nearby chains