J3_2NZ4_003
3D structure
- PDB id
- 2NZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GA*UGAC*GAGAUUUC
- Length
- 14 nucleotides
- Bulged bases
- 2NZ4|1|R|U|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2NZ4_003 not in the Motif Atlas
- Geometric match to J3_3G9C_002
- Geometric discrepancy: 0.0807
- The information below is about J3_3G9C_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60873.1
- Basepair signature
- cWW-cSH-tWW-F-tHS-F-cWW-tWS-cWW
- Number of instances in this motif group
- 1
Unit IDs
2NZ4|1|G|G|7
2NZ4|1|G|A|8
*
2NZ4|1|R|U|26
2NZ4|1|R|G|27
2NZ4|1|R|A|28
2NZ4|1|R|C|29
*
2NZ4|1|R|G|45
2NZ4|1|R|A|46
2NZ4|1|R|G|47
2NZ4|1|R|A|48
2NZ4|1|R|U|49
2NZ4|1|R|U|50
2NZ4|1|R|U|51
2NZ4|1|R|C|52
Current chains
- Chain G
- substrate strand RNA 13-mer
- Chain R
- GlmS ribozyme
Nearby chains
- Chain F
- substrate strand RNA 13-mer
- Chain Q
- GlmS ribozyme
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