J3_2O44_009

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

2O44|1|A|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O44_009 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1097

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

2O44|1|A|C|2496
2O44|1|A|A|2497
2O44|1|A|U|2498
2O44|1|A|C|2499
*
2O44|1|A|G|2524
2O44|1|A|U|2525
2O44|1|A|U|2526
*
2O44|1|A|A|2540
2O44|1|A|U|2541
2O44|1|A|U|2542
2O44|1|A|A|2543
2O44|1|A|A|2544
2O44|1|A|A|2545
2O44|1|A|G|2546

Current chains

Chain A

23S rRNA

Nearby chains