J3_2O44_010

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O44_010 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1582

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

2O44|1|A|G|30
2O44|1|A|C|31
*
2O44|1|A|G|485
2O44|1|A|U|486
2O44|1|A|G|487
2O44|1|A|A|488
2O44|1|A|A|489
2O44|1|A|A|490
2O44|1|A|A|491
2O44|1|A|G|492
*
2O44|1|A|C|519
2O44|1|A|C|520

Current chains

Chain A

23S rRNA

Nearby chains