J3_2O44_019

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

2O44|1|A|A|2770

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O44_019 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.4599

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

2O44|1|A|C|2769
2O44|1|A|A|2770
2O44|1|A|C|2771
*
2O44|1|A|G|2781
2O44|1|A|G|2782
2O44|1|A|U|2783
2O44|1|A|A|2784
2O44|1|A|A|2785
2O44|1|A|G|2786
*
2O44|1|A|C|2864
2O44|1|A|G|2865
2O44|1|A|A|2866
2O44|1|A|G|2867
2O44|1|A|G|2868

Current chains

Chain A

23S rRNA

Nearby chains