J3_2O45_004

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

2O45|1|A|A|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O45_004 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1736

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2O45|1|A|C|1311
2O45|1|A|G|1312
2O45|1|A|U|1313
2O45|1|A|A|1314
2O45|1|A|A|1315
2O45|1|A|G|1316
*
2O45|1|A|C|1641
2O45|1|A|G|1642
2O45|1|A|A|1643
*
2O45|1|A|U|1656
2O45|1|A|A|1657
2O45|1|A|A|1658
2O45|1|A|G|1659

Current chains

Chain A

23S rRNA

Nearby chains