J3_2O45_005

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

2O45|1|A|C|1623, 2O45|1|A|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2O45_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2495

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

2O45|1|A|C|1319
2O45|1|A|A|1320
2O45|1|A|A|1321
2O45|1|A|G|1322
*
2O45|1|A|C|1621
2O45|1|A|G|1622
2O45|1|A|C|1623
2O45|1|A|A|1624
2O45|1|A|A|1625
2O45|1|A|A|1626
2O45|1|A|C|1627
*
2O45|1|A|G|1636
2O45|1|A|U|1637
2O45|1|A|G|1638

Current chains

Chain A

23S rRNA

Nearby chains