J3_2OGO_001

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

2OGO|1|0|A|802, 2OGO|1|0|C|803, 2OGO|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|U|696
2OGO|1|0|G|697
2OGO|1|0|A|698
2OGO|1|0|G|699
2OGO|1|0|C|700
2OGO|1|0|U|701
2OGO|1|0|A|702
*
2OGO|1|0|U|786
2OGO|1|0|A|787
2OGO|1|0|G|788
2OGO|1|0|G|789
2OGO|1|0|A|790
*
2OGO|1|0|U|800
2OGO|1|0|A|801
2OGO|1|0|A|802
2OGO|1|0|C|803
2OGO|1|0|C|804
2OGO|1|0|G|805
2OGO|1|0|A|806
2OGO|1|0|A|807

Current chains

Chain 0

23S ribosomal RNA

Nearby chains