J3_2OGO_003

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGA*UUCAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

2OGO|1|0|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|G|1066
2OGO|1|0|G|1067
2OGO|1|0|A|1068
*
2OGO|1|0|U|1092
2OGO|1|0|U|1093
2OGO|1|0|C|1094
2OGO|1|0|A|1095
2OGO|1|0|A|1096
2OGO|1|0|A|1097
2OGO|1|0|G|1098
2OGO|1|0|A|1099
2OGO|1|0|G|1100
2OGO|1|0|U|1101
2OGO|1|0|G|1102
*
2OGO|1|0|C|1111
2OGO|1|0|U|1112
2OGO|1|0|C|1113
2OGO|1|0|A|1114
2OGO|1|0|C|1115

Current chains

Chain 0

23S ribosomal RNA

Nearby chains