J3_2OGO_006

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUCGGGAC*GACAG*CAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|G|1356
2OGO|1|0|U|1357
2OGO|1|0|C|1358
2OGO|1|0|G|1359
2OGO|1|0|G|1360
2OGO|1|0|G|1361
2OGO|1|0|A|1362
2OGO|1|0|C|1363
*
2OGO|1|0|G|1394
2OGO|1|0|A|1395
2OGO|1|0|C|1396
2OGO|1|0|A|1397
2OGO|1|0|G|1398
*
2OGO|1|0|C|1415
2OGO|1|0|A|1416
2OGO|1|0|C|1417

Current chains

Chain 0

23S ribosomal RNA

Nearby chains