J3_2OGO_010

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AC*GAAAAGC*GAUGU

Length

14 nucleotides

Bulged bases

2OGO|1|0|A|70, 2OGO|1|0|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_010 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.3426

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

2OGO|1|0|A|55
2OGO|1|0|C|56
*
2OGO|1|0|G|69
2OGO|1|0|A|70
2OGO|1|0|A|71
2OGO|1|0|A|72
2OGO|1|0|A|73
2OGO|1|0|G|74
2OGO|1|0|C|75
*
2OGO|1|0|G|108
2OGO|1|0|A|109
2OGO|1|0|U|110
2OGO|1|0|G|111
2OGO|1|0|U|112

Current chains

Chain 0

23S ribosomal RNA

Nearby chains