J3_2OGO_012

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUGGAUGC*GUGAAAAG*CCUGAAAC

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|G|24
2OGO|1|0|U|25
2OGO|1|0|G|26
2OGO|1|0|G|27
2OGO|1|0|A|28
2OGO|1|0|U|29
2OGO|1|0|G|30
2OGO|1|0|C|31
*
2OGO|1|0|G|485
2OGO|1|0|U|486
2OGO|1|0|G|487
2OGO|1|0|A|488
2OGO|1|0|A|489
2OGO|1|0|A|490
2OGO|1|0|A|491
2OGO|1|0|G|492
*
2OGO|1|0|C|519
2OGO|1|0|C|520
2OGO|1|0|U|521
2OGO|1|0|G|522
2OGO|1|0|A|523
2OGO|1|0|A|524
2OGO|1|0|A|525
2OGO|1|0|C|526

Current chains

Chain 0

23S ribosomal RNA

Nearby chains