J3_2OGO_013

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

2OGO|1|0|U|34, 2OGO|1|0|U|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2OGO_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.1362

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|C|32
2OGO|1|0|C|33
2OGO|1|0|U|34
2OGO|1|0|G|35
*
2OGO|1|0|C|457
2OGO|1|0|G|458
2OGO|1|0|A|459
2OGO|1|0|U|460
2OGO|1|0|A|461
2OGO|1|0|G|462
2OGO|1|0|C|463
2OGO|1|0|G|464
2OGO|1|0|C|465
2OGO|1|0|A|466
2OGO|1|0|U|467
2OGO|1|0|A|468
2OGO|1|0|G|469
2OGO|1|0|U|470
2OGO|1|0|A|471
2OGO|1|0|C|472
*
2OGO|1|0|G|479
2OGO|1|0|G|480
2OGO|1|0|A|481
2OGO|1|0|A|482
2OGO|1|0|A|483
2OGO|1|0|G|484

Current chains

Chain 0

23S ribosomal RNA

Nearby chains