J3_2OGO_016

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCAG*CGAACCGGUG*CUCGGAUGAG

Length

24 nucleotides

Bulged bases

2OGO|1|0|G|751, 2OGO|1|0|G|752, 2OGO|1|0|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|710
2OGO|1|0|C|711
2OGO|1|0|A|712
2OGO|1|0|G|713
*
2OGO|1|0|C|745
2OGO|1|0|G|746
2OGO|1|0|A|747
2OGO|1|0|A|748
2OGO|1|0|C|749
2OGO|1|0|C|750
2OGO|1|0|G|751
2OGO|1|0|G|752
2OGO|1|0|U|753
2OGO|1|0|G|754
*
2OGO|1|0|C|769
2OGO|1|0|U|770
2OGO|1|0|C|771
2OGO|1|0|G|772
2OGO|1|0|G|773
2OGO|1|0|A|774
2OGO|1|0|U|775
2OGO|1|0|G|776
2OGO|1|0|A|777
2OGO|1|0|G|778

Current chains

Chain 0

23S ribosomal RNA

Nearby chains