J3_2OGO_017

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AGGGACG*CC*GAAAAGCU

Length

17 nucleotides

Bulged bases

2OGO|1|0|C|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|A|1437
2OGO|1|0|G|1438
2OGO|1|0|G|1439
2OGO|1|0|G|1440
2OGO|1|0|A|1441
2OGO|1|0|C|1442
2OGO|1|0|G|1443
*
2OGO|1|0|C|1580
2OGO|1|0|C|1581
*
2OGO|1|0|G|1584
2OGO|1|0|A|1585
2OGO|1|0|A|1586
2OGO|1|0|A|1587
2OGO|1|0|A|1588
2OGO|1|0|G|1589
2OGO|1|0|C|1590
2OGO|1|0|U|1591

Current chains

Chain 0

23S ribosomal RNA

Nearby chains