J3_2OGO_019

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAGCUUAAGUUGAAAAACGGAGGCGGAG*CGAGU*GGCGGCAUUAG

Length

45 nucleotides

Bulged bases

2OGO|1|0|G|623, 2OGO|1|0|A|624, 2OGO|1|0|A|625, 2OGO|1|0|A|648, 2OGO|1|0|U|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|611
2OGO|1|0|G|612
2OGO|1|0|A|613
2OGO|1|0|G|614
2OGO|1|0|C|615
2OGO|1|0|U|616
2OGO|1|0|U|617
2OGO|1|0|A|618
2OGO|1|0|A|619
2OGO|1|0|G|620
2OGO|1|0|U|621
2OGO|1|0|U|622
2OGO|1|0|G|623
2OGO|1|0|A|624
2OGO|1|0|A|625
2OGO|1|0|A|626
2OGO|1|0|A|627
2OGO|1|0|A|628
2OGO|1|0|C|629
2OGO|1|0|G|630
2OGO|1|0|G|631
2OGO|1|0|A|632
2OGO|1|0|G|633
2OGO|1|0|G|634
2OGO|1|0|C|635
2OGO|1|0|G|636
2OGO|1|0|G|637
2OGO|1|0|A|638
2OGO|1|0|G|639
*
2OGO|1|0|C|646
2OGO|1|0|G|647
2OGO|1|0|A|648
2OGO|1|0|G|649
2OGO|1|0|U|650
*
2OGO|1|0|G|659
2OGO|1|0|G|660
2OGO|1|0|C|661
2OGO|1|0|G|662
2OGO|1|0|G|663
2OGO|1|0|C|664
2OGO|1|0|A|665
2OGO|1|0|U|666
2OGO|1|0|U|667
2OGO|1|0|A|668
2OGO|1|0|G|669

Current chains

Chain 0

23S ribosomal RNA

Nearby chains