J3_2OTJ_003
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAA*UGUUAG*CGUG
- Length
- 13 nucleotides
- Bulged bases
- 2OTJ|1|0|U|825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2OTJ_003 not in the Motif Atlas
- Homologous match to J3_4V9F_003
- Geometric discrepancy: 0.0374
- The information below is about J3_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.1
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
2OTJ|1|0|C|789
2OTJ|1|0|A|790
2OTJ|1|0|A|791
*
2OTJ|1|0|U|823
2OTJ|1|0|G|824
2OTJ|1|0|U|825
2OTJ|1|0|U|826
2OTJ|1|0|A|827
2OTJ|1|0|G|828
*
2OTJ|1|0|C|853
2OTJ|1|0|G|854
2OTJ|1|0|U|855
2OTJ|1|0|G|856
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2P
- Chain P
- 50S ribosomal protein L19e
- Chain Z
- 50S ribosomal protein L37Ae
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