J3_2OTJ_006
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAG*CGAGAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 2OTJ|1|0|G|1683, 2OTJ|1|0|A|1684
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2OTJ_006 not in the Motif Atlas
- Homologous match to J3_4V9F_006
- Geometric discrepancy: 0.035
- The information below is about J3_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
2OTJ|1|0|U|1412
2OTJ|1|0|A|1413
2OTJ|1|0|A|1414
2OTJ|1|0|G|1415
*
2OTJ|1|0|C|1680
2OTJ|1|0|G|1681
2OTJ|1|0|A|1682
2OTJ|1|0|G|1683
2OTJ|1|0|A|1684
2OTJ|1|0|A|1685
2OTJ|1|0|C|1686
*
2OTJ|1|0|G|1695
2OTJ|1|0|U|1696
2OTJ|1|0|G|1697
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
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