J3_2QA4_003

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

2QA4|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0952

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

2QA4|1|0|C|789
2QA4|1|0|A|790
2QA4|1|0|A|791
*
2QA4|1|0|U|823
2QA4|1|0|G|824
2QA4|1|0|U|825
2QA4|1|0|U|826
2QA4|1|0|A|827
2QA4|1|0|G|828
*
2QA4|1|0|C|853
2QA4|1|0|G|854
2QA4|1|0|U|855
2QA4|1|0|G|856

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae