J3_2QA4_013

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_013 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0962

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

2QA4|1|0|C|1450
2QA4|1|0|C|1451
2QA4|1|0|G|1452
2QA4|1|0|G|1453
2QA4|1|0|U|1454
2QA4|1|0|C|1455
*
2QA4|1|0|G|1490
2QA4|1|0|G|1491
2QA4|1|0|A|1492
2QA4|1|0|A|1493
2QA4|1|0|A|1494
*
2QA4|1|0|U|1511
2QA4|1|0|G|1512

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P