J3_2QA4_014

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GUCGAU*AACAG

Length

13 nucleotides

Bulged bases

2QA4|1|0|C|2850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QA4_014 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.1086

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2QA4|1|0|C|2831
2QA4|1|0|C|2832
*
2QA4|1|0|G|2848
2QA4|1|0|U|2849
2QA4|1|0|C|2850
2QA4|1|0|G|2851
2QA4|1|0|A|2852
2QA4|1|0|U|2853
*
2QA4|1|0|A|2905
2QA4|1|0|A|2906
2QA4|1|0|C|2907
2QA4|1|0|A|2908
2QA4|1|0|G|2909

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S RIBOSOMAL PROTEIN L31E