J3_2QBG_002
3D structure
- PDB id
- 2QBG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 2QBG|1|B|U|686, 2QBG|1|B|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2QBG_002 not in the Motif Atlas
- Geometric match to J3_5J7L_038
- Geometric discrepancy: 0.0636
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
2QBG|1|B|U|683
2QBG|1|B|G|684
2QBG|1|B|A|685
2QBG|1|B|U|686
2QBG|1|B|C|687
2QBG|1|B|U|688
2QBG|1|B|A|689
*
2QBG|1|B|U|773
2QBG|1|B|G|774
2QBG|1|B|G|775
*
2QBG|1|B|C|791
2QBG|1|B|A|792
2QBG|1|B|A|793
2QBG|1|B|A|794
Current chains
- Chain B
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
Coloring options: