J3_2QBG_003

3D structure

PDB id

2QBG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QBG_003 not in the Motif Atlas

Geometric match to J3_5J7L_039

Geometric discrepancy: 0.0613

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

2QBG|1|B|C|698
2QBG|1|B|A|699
2QBG|1|B|G|700
*
2QBG|1|B|C|732
2QBG|1|B|G|733
2QBG|1|B|A|734
2QBG|1|B|A|735
2QBG|1|B|C|736
*
2QBG|1|B|G|760
2QBG|1|B|A|761
2QBG|1|B|U|762
2QBG|1|B|G|763

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2