J3_2QBG_009
3D structure
- PDB id
- 2QBG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 2QBG|1|B|A|2518, 2QBG|1|B|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2QBG_009 not in the Motif Atlas
- Geometric match to J3_5J7L_046
- Geometric discrepancy: 0.0674
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
2QBG|1|B|C|2517
2QBG|1|B|A|2518
2QBG|1|B|U|2519
2QBG|1|B|C|2520
*
2QBG|1|B|G|2545
2QBG|1|B|U|2546
2QBG|1|B|A|2547
*
2QBG|1|B|U|2561
2QBG|1|B|U|2562
2QBG|1|B|U|2563
2QBG|1|B|A|2564
2QBG|1|B|A|2565
2QBG|1|B|A|2566
2QBG|1|B|G|2567
Current chains
- Chain B
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L14
Coloring options: