J3_2QBZ_002

3D structure

PDB id

2QBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the M-Box Riboswitch Aptamer Domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUG*UCAACAG*UUAAUG

Length

16 nucleotides

Bulged bases

2QBZ|1|X|C|86, 2QBZ|1|X|U|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QBZ_002 not in the Motif Atlas

Geometric match to J3_3PDR_002

Geometric discrepancy: 0.0951

The information below is about J3_3PDR_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65990.1

Basepair signature

cWW-tHW-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

2QBZ|1|X|C|54
2QBZ|1|X|U|55
2QBZ|1|X|G|56
*
2QBZ|1|X|U|85
2QBZ|1|X|C|86
2QBZ|1|X|A|87
2QBZ|1|X|A|88
2QBZ|1|X|C|89
2QBZ|1|X|A|90
2QBZ|1|X|G|91
*
2QBZ|1|X|U|115
2QBZ|1|X|U|116
2QBZ|1|X|A|117
2QBZ|1|X|A|118
2QBZ|1|X|U|119
2QBZ|1|X|G|120

Current chains

Chain X

M-Box RNA, ykoK riboswitch aptamer

Nearby chains