J3_3PDR_002

3D structure

PDB id

3PDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of manganese bound M-box RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.85 Å

Loop

Sequence

CUG*UCAACAG*UUAAUG

Length

16 nucleotides

Bulged bases

3PDR|1|X|C|86, 3PDR|1|X|U|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65990.1

Basepair signature

cWW-tHW-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

3PDR|1|X|C|54
3PDR|1|X|U|55
3PDR|1|X|G|56
*
3PDR|1|X|U|85
3PDR|1|X|C|86
3PDR|1|X|A|87
3PDR|1|X|A|88
3PDR|1|X|C|89
3PDR|1|X|A|90
3PDR|1|X|G|91
*
3PDR|1|X|U|115
3PDR|1|X|U|116
3PDR|1|X|A|117
3PDR|1|X|A|118
3PDR|1|X|U|119
3PDR|1|X|G|120

Current chains

Chain X

M-box Riboswitch RNA

Nearby chains