J3_2QEX_007

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2QEX_007 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0549

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

2QEX|1|0|G|2131
2QEX|1|0|C|2132
2QEX|1|0|U|2133
2QEX|1|0|G|2134
*
2QEX|1|0|C|2241
2QEX|1|0|U|2242
2QEX|1|0|C|2243
2QEX|1|0|A|2244
2QEX|1|0|C|2245
*
2QEX|1|0|G|2256
2QEX|1|0|G|2257
2QEX|1|0|A|2258
2QEX|1|0|C|2259
2QEX|1|0|A|2260
2QEX|1|0|C|2261
2QEX|1|0|C|2262

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain M

50S ribosomal protein L15e