J3_2QEX_014
3D structure
- PDB id
- 2QEX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GUCGAU*AACAG
- Length
- 13 nucleotides
- Bulged bases
- 2QEX|1|0|C|2850, 2QEX|1|0|A|2852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2QEX_014 not in the Motif Atlas
- Homologous match to J3_4V9F_019
- Geometric discrepancy: 0.1269
- The information below is about J3_4V9F_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
2QEX|1|0|C|2831
2QEX|1|0|C|2832
*
2QEX|1|0|G|2848
2QEX|1|0|U|2849
2QEX|1|0|C|2850
2QEX|1|0|G|2851
2QEX|1|0|A|2852
2QEX|1|0|U|2853
*
2QEX|1|0|A|2905
2QEX|1|0|A|2906
2QEX|1|0|C|2907
2QEX|1|0|A|2908
2QEX|1|0|G|2909
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain R
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L31e
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