J3_2QEX_015
3D structure
- PDB id
- 2QEX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA
- Length
- 30 nucleotides
- Bulged bases
- 2QEX|1|0|U|510, 2QEX|1|0|G|514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2QEX_015 not in the Motif Atlas
- Homologous match to J3_4V9F_012
- Geometric discrepancy: 0.0636
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
2QEX|1|0|U|27
2QEX|1|0|G|28
*
2QEX|1|0|C|480
2QEX|1|0|U|481
2QEX|1|0|G|482
2QEX|1|0|C|483
2QEX|1|0|A|484
2QEX|1|0|A|485
2QEX|1|0|A|486
2QEX|1|0|G|487
2QEX|1|0|U|488
2QEX|1|0|A|489
2QEX|1|0|C|490
2QEX|1|0|C|491
*
2QEX|1|0|G|501
2QEX|1|0|A|502
2QEX|1|0|G|503
2QEX|1|0|G|504
2QEX|1|0|C|505
2QEX|1|0|G|506
2QEX|1|0|A|507
2QEX|1|0|A|508
2QEX|1|0|A|509
2QEX|1|0|U|510
2QEX|1|0|A|511
2QEX|1|0|G|512
2QEX|1|0|A|513
2QEX|1|0|G|514
2QEX|1|0|C|515
2QEX|1|0|A|516
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain C
- 50S ribosomal protein L4P
- Chain R
- 50S ribosomal protein L22P
- Chain T
- 50S ribosomal protein L24P
Coloring options: