J3_2R8S_001

3D structure

PDB id

2R8S (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

CAAG*UGGC*GGUAUG

Length

14 nucleotides

Bulged bases

2R8S|1|R|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98798.1

Basepair signature

cWW-tHS-F-tHS-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

2R8S|1|R|C|138
2R8S|1|R|A|139
2R8S|1|R|A|140
2R8S|1|R|G|141
*
2R8S|1|R|U|162
2R8S|1|R|G|163
2R8S|1|R|G|164
2R8S|1|R|C|165
*
2R8S|1|R|G|175
2R8S|1|R|G|176
2R8S|1|R|U|177
2R8S|1|R|A|178
2R8S|1|R|U|179
2R8S|1|R|G|180

Current chains

Chain R

P4-P6 RNA RIBOZYME DOMAIN

Nearby chains

Chain H

Fab heavy chain

Chain L

Fab light chain